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On October 22, 2024, 9:41:15 AM UTC,
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Added resource utils.R to Analysis of a coastal North Sea fish community: comparison of aquatic environmental DNA concentrations to fish catches
| f | 1 | { | f | 1 | { |
| 2 | "author": null, | 2 | "author": null, | ||
| 3 | "author_email": null, | 3 | "author_email": null, | ||
| 4 | "code": "7b.b.w", | 4 | "code": "7b.b.w", | ||
| 5 | "contributor": "NIOZ Royal Netherlands Institute for Sea Research", | 5 | "contributor": "NIOZ Royal Netherlands Institute for Sea Research", | ||
| 6 | "creator_user_id": "8e2a21a2-2063-4539-921d-c12aea85ff6c", | 6 | "creator_user_id": "8e2a21a2-2063-4539-921d-c12aea85ff6c", | ||
| 7 | "creators": "[{\"firstname\":\"Judith\",\"lastname\":\"van | 7 | "creators": "[{\"firstname\":\"Judith\",\"lastname\":\"van | ||
| 8 | Bleijswijk\",\"affiliation\":\"Royal Netherlands Institute for Sea | 8 | Bleijswijk\",\"affiliation\":\"Royal Netherlands Institute for Sea | ||
| 9 | swijk@nioz.nl\",\"iscorrespondingauthor\":true},{\"firstname\":\"Julia | 9 | swijk@nioz.nl\",\"iscorrespondingauthor\":true},{\"firstname\":\"Julia | ||
| 10 | C. \",\"lastname\":\"Engelmann\",\"affiliation\":\"Royal Netherlands | 10 | C. \",\"lastname\":\"Engelmann\",\"affiliation\":\"Royal Netherlands | ||
| 11 | Institute for Sea Research | 11 | Institute for Sea Research | ||
| 12 | "firstname\":\"Lise\",\"lastname\":\"Klunder\",\"affiliation\":\"Royal | 12 | "firstname\":\"Lise\",\"lastname\":\"Klunder\",\"affiliation\":\"Royal | ||
| 13 | Netherlands Institute for Sea | 13 | Netherlands Institute for Sea | ||
| 14 | \"firstname\":\"Harry\",\"lastname\":\"Witte\",\"affiliation\":\"Royal | 14 | \"firstname\":\"Harry\",\"lastname\":\"Witte\",\"affiliation\":\"Royal | ||
| 15 | Netherlands Institute for Sea | 15 | Netherlands Institute for Sea | ||
| 16 | ress\":\"\",\"iscorrespondingauthor\":false},{\"firstname\":\"Johannes | 16 | ress\":\"\",\"iscorrespondingauthor\":false},{\"firstname\":\"Johannes | ||
| 17 | IJ.\",\"lastname\":\"Witte\",\"affiliation\":\"Royal Netherlands | 17 | IJ.\",\"lastname\":\"Witte\",\"affiliation\":\"Royal Netherlands | ||
| 18 | Institute for Sea | 18 | Institute for Sea | ||
| 19 | laddress\":\"\",\"iscorrespondingauthor\":false},{\"firstname\":\"Henk | 19 | laddress\":\"\",\"iscorrespondingauthor\":false},{\"firstname\":\"Henk | ||
| 20 | W.\",\"lastname\":\"van der Veer\",\"affiliation\":\"Royal Netherlands | 20 | W.\",\"lastname\":\"van der Veer\",\"affiliation\":\"Royal Netherlands | ||
| 21 | Institute for Sea | 21 | Institute for Sea | ||
| 22 | 61X\",\"contactemailaddress\":\"\",\"iscorrespondingauthor\":false}]", | 22 | 61X\",\"contactemailaddress\":\"\",\"iscorrespondingauthor\":false}]", | ||
| 23 | "dataset_persistent_id": "DOI:10.33591/nioz/7b.b.w", | 23 | "dataset_persistent_id": "DOI:10.33591/nioz/7b.b.w", | ||
| 24 | "dates": | 24 | "dates": | ||
| 25 | -09-09T22:00:00.000Z\",\"type\":\"collected\",\"information\":\"\"}]", | 25 | -09-09T22:00:00.000Z\",\"type\":\"collected\",\"information\":\"\"}]", | ||
| 26 | "deposit_date": "2019-12-18", | 26 | "deposit_date": "2019-12-18", | ||
| 27 | "depositor": "Judith Bleijswijk van", | 27 | "depositor": "Judith Bleijswijk van", | ||
| 28 | "distribution_date": "2019-12-18", | 28 | "distribution_date": "2019-12-18", | ||
| 29 | "distributor": "Research Data Management(NIOZ Royal Netherlands | 29 | "distributor": "Research Data Management(NIOZ Royal Netherlands | ||
| 30 | Institute for Sea Research)", | 30 | Institute for Sea Research)", | ||
| 31 | "doi_date_published": "2020-02-06", | 31 | "doi_date_published": "2020-02-06", | ||
| 32 | "funding_references": "[{\"name\":\"NWO basic | 32 | "funding_references": "[{\"name\":\"NWO basic | ||
| 33 | funding\",\"awardnumber\":\"\",\"awardtitle\":\"\"}]", | 33 | funding\",\"awardnumber\":\"\",\"awardtitle\":\"\"}]", | ||
| 34 | "geographic_coverage": "[{\"place\":\"Western Wadden | 34 | "geographic_coverage": "[{\"place\":\"Western Wadden | ||
| 35 | \"\",\"longitude_1\":\"\",\"latitude_2\":\"\",\"longitude_2\":\"\"}]", | 35 | \"\",\"longitude_1\":\"\",\"latitude_2\":\"\",\"longitude_2\":\"\"}]", | ||
| 36 | "groups": [], | 36 | "groups": [], | ||
| 37 | "id": "0da357f3-8226-4370-9805-f1713e8832cf", | 37 | "id": "0da357f3-8226-4370-9805-f1713e8832cf", | ||
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| 39 | "license_title": null, | 39 | "license_title": null, | ||
| 40 | "maintainer": null, | 40 | "maintainer": null, | ||
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| 42 | "metadata_created": "2024-10-22T09:41:15.433205", | 42 | "metadata_created": "2024-10-22T09:41:15.433205", | ||
| n | 43 | "metadata_modified": "2024-10-22T09:41:15.433212", | n | 43 | "metadata_modified": "2024-10-22T09:41:15.785666", |
| 44 | "name": "7bbw", | 44 | "name": "7bbw", | ||
| 45 | "notes": "Analyses of environmental DNA has the potential to become | 45 | "notes": "Analyses of environmental DNA has the potential to become | ||
| 46 | an integrated tool in fish research and management. We performed a | 46 | an integrated tool in fish research and management. We performed a | ||
| 47 | pilot study during the spring migration of fishes from the North Sea | 47 | pilot study during the spring migration of fishes from the North Sea | ||
| 48 | into the Wadden Sea and present comparative results from daily fyke | 48 | into the Wadden Sea and present comparative results from daily fyke | ||
| 49 | catches (20 mm mesh) in the Marsdiep tidal inlet on two locations and | 49 | catches (20 mm mesh) in the Marsdiep tidal inlet on two locations and | ||
| 50 | results from weekly fish eDNA analyses on three locations, all within | 50 | results from weekly fish eDNA analyses on three locations, all within | ||
| 51 | 2 km distance. \nFish catches did not differ significantly between the | 51 | 2 km distance. \nFish catches did not differ significantly between the | ||
| 52 | two locations, whereas the eDNA composition showed a significant | 52 | two locations, whereas the eDNA composition showed a significant | ||
| 53 | location effect. However, when eDNA analysis was restricted to species | 53 | location effect. However, when eDNA analysis was restricted to species | ||
| 54 | that were caught with the fykes, differences among locations became | 54 | that were caught with the fykes, differences among locations became | ||
| 55 | insignificant. Over ten weeks, from late April to early July, | 55 | insignificant. Over ten weeks, from late April to early July, | ||
| 56 | presence-absence calls of fishes based on weekly eDNA sampling | 56 | presence-absence calls of fishes based on weekly eDNA sampling | ||
| 57 | significantly agreed with calls based on seven days of fyke fishing 1 | 57 | significantly agreed with calls based on seven days of fyke fishing 1 | ||
| 58 | km westwards. Fish eDNA compositions differed significantly among | 58 | km westwards. Fish eDNA compositions differed significantly among | ||
| 59 | sample days and months but not between tides. Over the season, | 59 | sample days and months but not between tides. Over the season, | ||
| 60 | patterns in eDNA concentration (12S rRNA gene copies/L) inferred from | 60 | patterns in eDNA concentration (12S rRNA gene copies/L) inferred from | ||
| 61 | quantitative PCR and Illumina HiSeq community composition, | 61 | quantitative PCR and Illumina HiSeq community composition, | ||
| 62 | corresponded to patterns in wet mass for the eight most abundant fish | 62 | corresponded to patterns in wet mass for the eight most abundant fish | ||
| 63 | species in the fyke (>6 weeks present) despite changes in water | 63 | species in the fyke (>6 weeks present) despite changes in water | ||
| 64 | temperature and changes in fish size class. Small sandeel and gobies, | 64 | temperature and changes in fish size class. Small sandeel and gobies, | ||
| 65 | which are important prey for large fishes and birds, were typically | 65 | which are important prey for large fishes and birds, were typically | ||
| 66 | missed with the fyke but contributed up to 25-40% of the fish eDNA | 66 | missed with the fyke but contributed up to 25-40% of the fish eDNA | ||
| 67 | depending on the sample location.", | 67 | depending on the sample location.", | ||
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| 78 | "name": "nioz", | 78 | "name": "nioz", | ||
| 79 | "state": "active", | 79 | "state": "active", | ||
| 80 | "title": "Royal Netherlands Institute for Sea Research", | 80 | "title": "Royal Netherlands Institute for Sea Research", | ||
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| 90 | "subject": "Earth and Environmental Sciences", | 113 | "subject": "Earth and Environmental Sciences", | ||
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| 93 | "display_name": "Biodiversity", | 116 | "display_name": "Biodiversity", | ||
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| 149 | "title": "Analysis of a coastal North Sea fish community: comparison | 172 | "title": "Analysis of a coastal North Sea fish community: comparison | ||
| 150 | of aquatic environmental DNA concentrations to fish catches", | 173 | of aquatic environmental DNA concentrations to fish catches", | ||
| 151 | "type": "dataset", | 174 | "type": "dataset", | ||
| 152 | "url": "https://dataportal.nioz.nl/doi/10.33591/nioz/7b.b.w", | 175 | "url": "https://dataportal.nioz.nl/doi/10.33591/nioz/7b.b.w", | ||
| 153 | "version": "1" | 176 | "version": "1" | ||
| 154 | } | 177 | } |