Changes
On April 18, 2025, 7:17:34 AM UTC,
-
Changed value of field
related_identifier
tohttps://doi.org/10.1038/s41597-025-04540-9, https://github.com/allertbijleveld/sibes
in SIBES dataset
| f | 1 | { | f | 1 | { |
| 2 | "alternate_identifier": | 2 | "alternate_identifier": | ||
| 3 | "https://doi.org/10.1038/s41597-025-04540-9", | 3 | "https://doi.org/10.1038/s41597-025-04540-9", | ||
| 4 | "author": "Allert Imre Bijleveld (NIOZ Royal Netherlands Institute | 4 | "author": "Allert Imre Bijleveld (NIOZ Royal Netherlands Institute | ||
| 5 | for Sea Research)", | 5 | for Sea Research)", | ||
| 6 | "author_email": "allert.bijleveld@nioz.nl", | 6 | "author_email": "allert.bijleveld@nioz.nl", | ||
| 7 | "code": "7b.b.ug", | 7 | "code": "7b.b.ug", | ||
| 8 | "contributor": "Royal Netherlands Institute for Sea Research | 8 | "contributor": "Royal Netherlands Institute for Sea Research | ||
| 9 | (NIOZ)", | 9 | (NIOZ)", | ||
| 10 | "creator_user_id": "335c40ff-a8b9-4320-8ae5-f380f87a4e56", | 10 | "creator_user_id": "335c40ff-a8b9-4320-8ae5-f380f87a4e56", | ||
| 11 | "creators": "[{\"firstname\":\"Allert | 11 | "creators": "[{\"firstname\":\"Allert | ||
| 12 | \"Bijleveld\",\"orcid\":\"0000-0002-3159-8944\",\"affiliation\":\"NIOZ | 12 | \"Bijleveld\",\"orcid\":\"0000-0002-3159-8944\",\"affiliation\":\"NIOZ | ||
| 13 | Royal Netherlands Institute for Sea | 13 | Royal Netherlands Institute for Sea | ||
| 14 | tactemailaddress\":\"allert.bijleveld@nioz.nl\",\"formatted\":\"Allert | 14 | tactemailaddress\":\"allert.bijleveld@nioz.nl\",\"formatted\":\"Allert | ||
| 15 | Imre Bijleveld - NIOZ Royal Netherlands Institute for Sea Research - | 15 | Imre Bijleveld - NIOZ Royal Netherlands Institute for Sea Research - | ||
| 16 | ORCID: 0000-0002-3159-8944 - Corresponding Author - | 16 | ORCID: 0000-0002-3159-8944 - Corresponding Author - | ||
| 17 | Marten\",\"lastname\":\"Tacoma\",\"orcid\":null,\"affiliation\":\"NIOZ | 17 | Marten\",\"lastname\":\"Tacoma\",\"orcid\":null,\"affiliation\":\"NIOZ | ||
| 18 | Royal Netherlands Institute for Sea | 18 | Royal Netherlands Institute for Sea | ||
| 19 | ndingauthor\":null,\"contactemailaddress\":null,\"formatted\":\"Marten | 19 | ndingauthor\":null,\"contactemailaddress\":null,\"formatted\":\"Marten | ||
| 20 | Tacoma - NIOZ Royal Netherlands Institute for Sea Research - ORCID: | 20 | Tacoma - NIOZ Royal Netherlands Institute for Sea Research - ORCID: | ||
| 21 | nita\",\"lastname\":\"Koolhaas\",\"orcid\":null,\"affiliation\":\"NIOZ | 21 | nita\",\"lastname\":\"Koolhaas\",\"orcid\":null,\"affiliation\":\"NIOZ | ||
| 22 | Royal Netherlands Institute for Sea | 22 | Royal Netherlands Institute for Sea | ||
| 23 | ondingauthor\":null,\"contactemailaddress\":null,\"formatted\":\"Anita | 23 | ondingauthor\":null,\"contactemailaddress\":null,\"formatted\":\"Anita | ||
| 24 | Koolhaas - NIOZ Royal Netherlands Institute for Sea Research - ORCID: | 24 | Koolhaas - NIOZ Royal Netherlands Institute for Sea Research - ORCID: | ||
| 25 | \"}]", | 25 | \"}]", | ||
| 26 | "dataset_persistent_id": "DOI:10.25850/nioz/7b.b.ug", | 26 | "dataset_persistent_id": "DOI:10.25850/nioz/7b.b.ug", | ||
| 27 | "deposit_date": "2023-12-06", | 27 | "deposit_date": "2023-12-06", | ||
| 28 | "depositor": "Allert Bijleveld (Allert.Bijleveld@nioz.nl)", | 28 | "depositor": "Allert Bijleveld (Allert.Bijleveld@nioz.nl)", | ||
| 29 | "distribution_date": "2023-12-06", | 29 | "distribution_date": "2023-12-06", | ||
| 30 | "distributor": "Research Data Management(NIOZ Royal Netherlands | 30 | "distributor": "Research Data Management(NIOZ Royal Netherlands | ||
| 31 | Institute for Sea Research)", | 31 | Institute for Sea Research)", | ||
| 32 | "doi_date_published": "2024-12-21T11:58:49", | 32 | "doi_date_published": "2024-12-21T11:58:49", | ||
| 33 | "funding_references": "[{\"name\":\"NIOZ Royal Netherlands Institute | 33 | "funding_references": "[{\"name\":\"NIOZ Royal Netherlands Institute | ||
| 34 | for Sea | 34 | for Sea | ||
| 35 | search\",\"awardnumber\":null,\"awardtitle\":null,\"formatted\":\"NIOZ | 35 | search\",\"awardnumber\":null,\"awardtitle\":null,\"formatted\":\"NIOZ | ||
| 36 | Royal Netherlands Institute for Sea Research - | 36 | Royal Netherlands Institute for Sea Research - | ||
| 37 | -\"},{\"name\":\"Rijkswaterstaat (RWS) | 37 | -\"},{\"name\":\"Rijkswaterstaat (RWS) | ||
| 38 | awardnumber\":null,\"awardtitle\":null,\"formatted\":\"Rijkswaterstaat | 38 | awardnumber\":null,\"awardtitle\":null,\"formatted\":\"Rijkswaterstaat | ||
| 39 | (RWS) - -\"},{\"name\":\"Nederlandse Aardolie Maatschappij | 39 | (RWS) - -\"},{\"name\":\"Nederlandse Aardolie Maatschappij | ||
| 40 | ",\"awardnumber\":null,\"awardtitle\":null,\"formatted\":\"Nederlandse | 40 | ",\"awardnumber\":null,\"awardtitle\":null,\"formatted\":\"Nederlandse | ||
| 41 | Aardolie Maatschappij (NAM) - -\"}]", | 41 | Aardolie Maatschappij (NAM) - -\"}]", | ||
| 42 | "geographic_coverage": "[{\"place\":\"Dutch Wadden Sea | 42 | "geographic_coverage": "[{\"place\":\"Dutch Wadden Sea | ||
| 43 | "longitude_2\":\"4.79\",\"longitude_1\":\"7.25\",\"formatted\":\"Dutch | 43 | "longitude_2\":\"4.79\",\"longitude_1\":\"7.25\",\"formatted\":\"Dutch | ||
| 44 | Wadden Sea N: 53.55 S: 52.88 E: 7.25 W: 4.79\"}]", | 44 | Wadden Sea N: 53.55 S: 52.88 E: 7.25 W: 4.79\"}]", | ||
| 45 | "groups": [], | 45 | "groups": [], | ||
| 46 | "id": "95a5d109-1c31-4f1c-b6af-e0ef3892d83b", | 46 | "id": "95a5d109-1c31-4f1c-b6af-e0ef3892d83b", | ||
| 47 | "isopen": true, | 47 | "isopen": true, | ||
| 48 | "license_id": "CC-BY-SA-4.0", | 48 | "license_id": "CC-BY-SA-4.0", | ||
| 49 | "license_title": "Creative Commons Attribution Share-Alike 4.0", | 49 | "license_title": "Creative Commons Attribution Share-Alike 4.0", | ||
| 50 | "license_url": "https://creativecommons.org/licenses/by-sa/4.0/", | 50 | "license_url": "https://creativecommons.org/licenses/by-sa/4.0/", | ||
| 51 | "maintainer": "Allert", | 51 | "maintainer": "Allert", | ||
| 52 | "maintainer_email": "Allert.Bijleveld@nioz.nl", | 52 | "maintainer_email": "Allert.Bijleveld@nioz.nl", | ||
| 53 | "metadata_created": "2024-10-22T17:56:19.348394", | 53 | "metadata_created": "2024-10-22T17:56:19.348394", | ||
| n | 54 | "metadata_modified": "2025-02-14T17:32:26.322263", | n | 54 | "metadata_modified": "2025-04-18T07:17:33.615877", |
| 55 | "name": "sibes-dataset", | 55 | "name": "sibes-dataset", | ||
| 56 | "notes": "Here, we present SIBES-data on median grain size | 56 | "notes": "Here, we present SIBES-data on median grain size | ||
| 57 | (micrometer) and mud content (%) of sediment, and abundances (#) and | 57 | (micrometer) and mud content (%) of sediment, and abundances (#) and | ||
| 58 | biomass (g) of benthic invertebrate found at sampling stations on | 58 | biomass (g) of benthic invertebrate found at sampling stations on | ||
| 59 | intertidal mudflats of the Dutch Wadden Sea. SIBES stands for Synoptic | 59 | intertidal mudflats of the Dutch Wadden Sea. SIBES stands for Synoptic | ||
| 60 | Intertidal BEnthic Survey and is a long-term ecological time-series | 60 | Intertidal BEnthic Survey and is a long-term ecological time-series | ||
| 61 | performed by NIOZ. It is aimed at understanding ecological processes | 61 | performed by NIOZ. It is aimed at understanding ecological processes | ||
| 62 | and sediment dynamics of intertidal mudflats related to benthic | 62 | and sediment dynamics of intertidal mudflats related to benthic | ||
| 63 | invertebrates. Details of the sampling method, laboratory protocols | 63 | invertebrates. Details of the sampling method, laboratory protocols | ||
| 64 | and data curation can be found in the accompanying paper in the | 64 | and data curation can be found in the accompanying paper in the | ||
| 65 | journal \"Scientific Data\" | 65 | journal \"Scientific Data\" | ||
| 66 | (https://doi.org/10.1038/s41597-025-04540-9). In summary, roughly | 66 | (https://doi.org/10.1038/s41597-025-04540-9). In summary, roughly | ||
| 67 | 4,500 stations are sampled yearly from 2008 and onwards. The most | 67 | 4,500 stations are sampled yearly from 2008 and onwards. The most | ||
| 68 | recent 3 years are under embargo, but available upon request to the | 68 | recent 3 years are under embargo, but available upon request to the | ||
| 69 | corresponding author. Samples were collected on a 500 m grid and on | 69 | corresponding author. Samples were collected on a 500 m grid and on | ||
| 70 | randomly located stations in the months June to October. Stations were | 70 | randomly located stations in the months June to October. Stations were | ||
| 71 | not sampled at the same dates across years. Sampling stations were | 71 | not sampled at the same dates across years. Sampling stations were | ||
| 72 | visited by foot during low tide and by boat during high tide. At each | 72 | visited by foot during low tide and by boat during high tide. At each | ||
| 73 | site sampled by boat, two cores were taken to a depth of ~25 cm | 73 | site sampled by boat, two cores were taken to a depth of ~25 cm | ||
| 74 | (combined area of 0.0173 m2). Samples were sieved on a 1 mm round mesh | 74 | (combined area of 0.0173 m2). Samples were sieved on a 1 mm round mesh | ||
| 75 | in the field. After sieving, large bivalves were separated from the | 75 | in the field. After sieving, large bivalves were separated from the | ||
| 76 | other species and frozen at -20 degrees Celsius to allow for easier | 76 | other species and frozen at -20 degrees Celsius to allow for easier | ||
| 77 | process in subsequent laboratory analysis. From the remaining sample, | 77 | process in subsequent laboratory analysis. From the remaining sample, | ||
| 78 | all benthic invertebrates were collected and preserved at a 4% | 78 | all benthic invertebrates were collected and preserved at a 4% | ||
| 79 | formaldehyde solution. Sediment samples were taken with a small core | 79 | formaldehyde solution. Sediment samples were taken with a small core | ||
| 80 | with a diameter of 33 mm from the surface of the inter-tidal flats to | 80 | with a diameter of 33 mm from the surface of the inter-tidal flats to | ||
| 81 | a depth of 4 cm and then frozen at -20 degrees C. In the laboratory, | 81 | a depth of 4 cm and then frozen at -20 degrees C. In the laboratory, | ||
| 82 | organisms were identified and counted and their biomass determined as | 82 | organisms were identified and counted and their biomass determined as | ||
| 83 | ash-free dry-mass (AFDM). Sediment samples were freeze-dried and grain | 83 | ash-free dry-mass (AFDM). Sediment samples were freeze-dried and grain | ||
| 84 | size distributions measured with a particle size analyser. For further | 84 | size distributions measured with a particle size analyser. For further | ||
| 85 | details concerning methods, processing, data curation, analyses and | 85 | details concerning methods, processing, data curation, analyses and | ||
| 86 | R-scripts, we refer to the accompanying paper. When using these data, | 86 | R-scripts, we refer to the accompanying paper. When using these data, | ||
| 87 | please cite that paper (https://doi.org/10.1038/s41597-025-04540-9). | 87 | please cite that paper (https://doi.org/10.1038/s41597-025-04540-9). | ||
| 88 | An R-library with examples of analysing and plotting the data is | 88 | An R-library with examples of analysing and plotting the data is | ||
| 89 | provided online at https://github.com/allertbijleveld/sibes. In | 89 | provided online at https://github.com/allertbijleveld/sibes. In | ||
| 90 | sharing these data, we hope to enhance collaborations and | 90 | sharing these data, we hope to enhance collaborations and | ||
| 91 | understanding of the impact of various pressures on macrozoobenthic | 91 | understanding of the impact of various pressures on macrozoobenthic | ||
| 92 | invertebrates, sediment composition, food webs, the ecosystem, and | 92 | invertebrates, sediment composition, food webs, the ecosystem, and | ||
| 93 | biodiversity in the Wadden Sea and other intertidal habitats.", | 93 | biodiversity in the Wadden Sea and other intertidal habitats.", | ||
| 94 | "num_resources": 3, | 94 | "num_resources": 3, | ||
| 95 | "num_tags": 12, | 95 | "num_tags": 12, | ||
| 96 | "organization": { | 96 | "organization": { | ||
| 97 | "approval_status": "approved", | 97 | "approval_status": "approved", | ||
| 98 | "created": "2024-10-22T06:06:56.074257", | 98 | "created": "2024-10-22T06:06:56.074257", | ||
| 99 | "description": "", | 99 | "description": "", | ||
| 100 | "id": "bed2a893-3895-450b-bf4b-c74318003b1b", | 100 | "id": "bed2a893-3895-450b-bf4b-c74318003b1b", | ||
| 101 | "image_url": | 101 | "image_url": | ||
| 102 | z.nl/application/files/1216/8924/5333/NIOZ-logo_witte_randi-2023.svg", | 102 | z.nl/application/files/1216/8924/5333/NIOZ-logo_witte_randi-2023.svg", | ||
| 103 | "is_organization": true, | 103 | "is_organization": true, | ||
| 104 | "name": "nioz", | 104 | "name": "nioz", | ||
| 105 | "state": "active", | 105 | "state": "active", | ||
| 106 | "title": "Royal Netherlands Institute for Sea Research", | 106 | "title": "Royal Netherlands Institute for Sea Research", | ||
| 107 | "type": "organization" | 107 | "type": "organization" | ||
| 108 | }, | 108 | }, | ||
| 109 | "owner_org": "bed2a893-3895-450b-bf4b-c74318003b1b", | 109 | "owner_org": "bed2a893-3895-450b-bf4b-c74318003b1b", | ||
| 110 | "private": false, | 110 | "private": false, | ||
| 111 | "production_date": "2024-12-21", | 111 | "production_date": "2024-12-21", | ||
| t | t | 112 | "related_identifier": "https://doi.org/10.1038/s41597-025-04540-9, | ||
| 112 | "related_identifier": "https://github.com/allertbijleveld/sibes", | 113 | https://github.com/allertbijleveld/sibes", | ||
| 113 | "relationships_as_object": [], | 114 | "relationships_as_object": [], | ||
| 114 | "relationships_as_subject": [], | 115 | "relationships_as_subject": [], | ||
| 115 | "resources": [ | 116 | "resources": [ | ||
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| 182 | ], | 183 | ], | ||
| 183 | "state": "active", | 184 | "state": "active", | ||
| 184 | "subject": "Earth and Environmental Sciences", | 185 | "subject": "Earth and Environmental Sciences", | ||
| 185 | "tags": [ | 186 | "tags": [ | ||
| 186 | { | 187 | { | ||
| 187 | "display_name": "SIBES", | 188 | "display_name": "SIBES", | ||
| 188 | "id": "dcca6a4c-6f2e-4a5a-bfa8-709d90cbf8f9", | 189 | "id": "dcca6a4c-6f2e-4a5a-bfa8-709d90cbf8f9", | ||
| 189 | "name": "SIBES", | 190 | "name": "SIBES", | ||
| 190 | "state": "active", | 191 | "state": "active", | ||
| 191 | "vocabulary_id": null | 192 | "vocabulary_id": null | ||
| 192 | }, | 193 | }, | ||
| 193 | { | 194 | { | ||
| 194 | "display_name": "Wadden Sea", | 195 | "display_name": "Wadden Sea", | ||
| 195 | "id": "543625c0-3df2-4e6c-95b2-b2a9fda7851e", | 196 | "id": "543625c0-3df2-4e6c-95b2-b2a9fda7851e", | ||
| 196 | "name": "Wadden Sea", | 197 | "name": "Wadden Sea", | ||
| 197 | "state": "active", | 198 | "state": "active", | ||
| 198 | "vocabulary_id": null | 199 | "vocabulary_id": null | ||
| 199 | }, | 200 | }, | ||
| 200 | { | 201 | { | ||
| 201 | "display_name": "benthic invertebrates", | 202 | "display_name": "benthic invertebrates", | ||
| 202 | "id": "690cbef5-deff-4b28-8c91-f7b0d1cbbe20", | 203 | "id": "690cbef5-deff-4b28-8c91-f7b0d1cbbe20", | ||
| 203 | "name": "benthic invertebrates", | 204 | "name": "benthic invertebrates", | ||
| 204 | "state": "active", | 205 | "state": "active", | ||
| 205 | "vocabulary_id": null | 206 | "vocabulary_id": null | ||
| 206 | }, | 207 | }, | ||
| 207 | { | 208 | { | ||
| 208 | "display_name": "biodiversity", | 209 | "display_name": "biodiversity", | ||
| 209 | "id": "86306854-44e6-475a-bb80-528e09dc7917", | 210 | "id": "86306854-44e6-475a-bb80-528e09dc7917", | ||
| 210 | "name": "biodiversity", | 211 | "name": "biodiversity", | ||
| 211 | "state": "active", | 212 | "state": "active", | ||
| 212 | "vocabulary_id": null | 213 | "vocabulary_id": null | ||
| 213 | }, | 214 | }, | ||
| 214 | { | 215 | { | ||
| 215 | "display_name": "biomass", | 216 | "display_name": "biomass", | ||
| 216 | "id": "6690403c-9212-4adb-9869-2dd6194b1b69", | 217 | "id": "6690403c-9212-4adb-9869-2dd6194b1b69", | ||
| 217 | "name": "biomass", | 218 | "name": "biomass", | ||
| 218 | "state": "active", | 219 | "state": "active", | ||
| 219 | "vocabulary_id": null | 220 | "vocabulary_id": null | ||
| 220 | }, | 221 | }, | ||
| 221 | { | 222 | { | ||
| 222 | "display_name": "intertidal mudlfats", | 223 | "display_name": "intertidal mudlfats", | ||
| 223 | "id": "df9d0455-83b8-4722-85ac-b49383ce6f90", | 224 | "id": "df9d0455-83b8-4722-85ac-b49383ce6f90", | ||
| 224 | "name": "intertidal mudlfats", | 225 | "name": "intertidal mudlfats", | ||
| 225 | "state": "active", | 226 | "state": "active", | ||
| 226 | "vocabulary_id": null | 227 | "vocabulary_id": null | ||
| 227 | }, | 228 | }, | ||
| 228 | { | 229 | { | ||
| 229 | "display_name": "macrozoobenthos", | 230 | "display_name": "macrozoobenthos", | ||
| 230 | "id": "0562514f-9682-4fe1-a3ca-56838420e92a", | 231 | "id": "0562514f-9682-4fe1-a3ca-56838420e92a", | ||
| 231 | "name": "macrozoobenthos", | 232 | "name": "macrozoobenthos", | ||
| 232 | "state": "active", | 233 | "state": "active", | ||
| 233 | "vocabulary_id": null | 234 | "vocabulary_id": null | ||
| 234 | }, | 235 | }, | ||
| 235 | { | 236 | { | ||
| 236 | "display_name": "median grain size", | 237 | "display_name": "median grain size", | ||
| 237 | "id": "af7bff5c-e3bc-44d7-9660-8a49f38a820a", | 238 | "id": "af7bff5c-e3bc-44d7-9660-8a49f38a820a", | ||
| 238 | "name": "median grain size", | 239 | "name": "median grain size", | ||
| 239 | "state": "active", | 240 | "state": "active", | ||
| 240 | "vocabulary_id": null | 241 | "vocabulary_id": null | ||
| 241 | }, | 242 | }, | ||
| 242 | { | 243 | { | ||
| 243 | "display_name": "mud content", | 244 | "display_name": "mud content", | ||
| 244 | "id": "17c90e04-4a65-44e7-b447-0994e4a6a820", | 245 | "id": "17c90e04-4a65-44e7-b447-0994e4a6a820", | ||
| 245 | "name": "mud content", | 246 | "name": "mud content", | ||
| 246 | "state": "active", | 247 | "state": "active", | ||
| 247 | "vocabulary_id": null | 248 | "vocabulary_id": null | ||
| 248 | }, | 249 | }, | ||
| 249 | { | 250 | { | ||
| 250 | "display_name": "sediment", | 251 | "display_name": "sediment", | ||
| 251 | "id": "bee8bc49-03bc-40a3-a4ae-efd5262097b1", | 252 | "id": "bee8bc49-03bc-40a3-a4ae-efd5262097b1", | ||
| 252 | "name": "sediment", | 253 | "name": "sediment", | ||
| 253 | "state": "active", | 254 | "state": "active", | ||
| 254 | "vocabulary_id": null | 255 | "vocabulary_id": null | ||
| 255 | }, | 256 | }, | ||
| 256 | { | 257 | { | ||
| 257 | "display_name": "sibes", | 258 | "display_name": "sibes", | ||
| 258 | "id": "2dfe5c9b-4861-4e0c-bde3-2a9141528826", | 259 | "id": "2dfe5c9b-4861-4e0c-bde3-2a9141528826", | ||
| 259 | "name": "sibes", | 260 | "name": "sibes", | ||
| 260 | "state": "active", | 261 | "state": "active", | ||
| 261 | "vocabulary_id": null | 262 | "vocabulary_id": null | ||
| 262 | }, | 263 | }, | ||
| 263 | { | 264 | { | ||
| 264 | "display_name": "wadden sea", | 265 | "display_name": "wadden sea", | ||
| 265 | "id": "b1e4567a-5354-4e10-ab83-723130f226d9", | 266 | "id": "b1e4567a-5354-4e10-ab83-723130f226d9", | ||
| 266 | "name": "wadden sea", | 267 | "name": "wadden sea", | ||
| 267 | "state": "active", | 268 | "state": "active", | ||
| 268 | "vocabulary_id": null | 269 | "vocabulary_id": null | ||
| 269 | } | 270 | } | ||
| 270 | ], | 271 | ], | ||
| 271 | "title": "SIBES dataset", | 272 | "title": "SIBES dataset", | ||
| 272 | "type": "dataset", | 273 | "type": "dataset", | ||
| 273 | "url": "https://doi.org/10.25850/nioz/7b.b.ug", | 274 | "url": "https://doi.org/10.25850/nioz/7b.b.ug", | ||
| 274 | "version": "1" | 275 | "version": "1" | ||
| 275 | } | 276 | } |