Changes
On October 22, 2024, 9:01:10 PM UTC,
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Updated description of 2023 ATP model verification data file from
A recent model demonstrated that the adenosine triphosphate (ATP) content of spherical aquatic organisms with a 10 to 50 µm diameter is between 0.16 to 19.9 pg cell-1. The model was validated by comparing microscopy-based counts with ATP concentrations from a commercial ATP kit. On average, freshwater organisms contain 0.33 pg ATP cell-1, have a spherical equivalent diameter (sed) of 13 µm, while marine organisms have 0.89 pg ATP cell-1 and a sed of 18 µm. The ATP content of both organisms falls in the 0.16 to 19.9 pg cell-1 model range. In addition, their 13 to 18 µm size is within the 10 to 50 µm ballast water size range and in agreement with the average of 15 µm sed of a coastal plankton size-distribution model. This study concludes that the ATP-model is reliable, emphasizing the need for caution when converting three-dimensional biomass proxies into linear cell concentrations. The data used in the validation are accessible here.
toA recent model demonstrated that the adenosine triphosphate (ATP) content of spherical aquatic organisms with a 10 to 50 µm diameter is between 0.16 to 19.9 pg cell-1. The model was validated by comparing microscopy-based counts with ATP concentrations from a commercial ATP kit. See: https://doi.org/10.1016/j.marpolbul.2024.116066. On average, freshwater organisms contain 0.33 pg ATP cell-1, have a spherical equivalent diameter (sed) of 13 µm, while marine organisms have 0.89 pg ATP cell-1 and a sed of 18 µm. The ATP content of both organisms falls in the 0.16 to 19.9 pg cell-1 model range. In addition, their 13 to 18 µm size is within the 10 to 50 µm ballast water size range and in agreement with the average of 15 µm sed of a coastal plankton size-distribution model. This study concludes that the ATP-model is reliable, emphasizing the need for caution when converting three-dimensional biomass proxies into linear cell concentrations. The data used in the validation are accessible here.
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Changed the version of 2023 ATP model verification data file to 2 (previously 1)
| f | 1 | { | f | 1 | { |
| 2 | "author": null, | 2 | "author": null, | ||
| 3 | "author_email": null, | 3 | "author_email": null, | ||
| 4 | "code": "7b.b.lg", | 4 | "code": "7b.b.lg", | ||
| 5 | "contributor": "NIOZ Royal Netherlands Institute for Sea Research", | 5 | "contributor": "NIOZ Royal Netherlands Institute for Sea Research", | ||
| 6 | "creator_user_id": "d820c971-b48c-44f0-8f1f-0ea6fac9176f", | 6 | "creator_user_id": "d820c971-b48c-44f0-8f1f-0ea6fac9176f", | ||
| 7 | "creators": | 7 | "creators": | ||
| 8 | \"Peperzak\",\"orcid\":\"0000-0003-0691-2521\",\"affiliation\":\"Royal | 8 | \"Peperzak\",\"orcid\":\"0000-0003-0691-2521\",\"affiliation\":\"Royal | ||
| 9 | Netherlands Institute for Sea | 9 | Netherlands Institute for Sea | ||
| 10 | contactemailaddress\":\"louis.peperzak@nioz.nl\",\"formatted\":\"Louis | 10 | contactemailaddress\":\"louis.peperzak@nioz.nl\",\"formatted\":\"Louis | ||
| 11 | Peperzak - Royal Netherlands Institute for Sea Research - ORCID: | 11 | Peperzak - Royal Netherlands Institute for Sea Research - ORCID: | ||
| 12 | 0000-0003-0691-2521 - Corresponding Author - | 12 | 0000-0003-0691-2521 - Corresponding Author - | ||
| 13 | astname\":\"Casa-Monroy\",\"orcid\":null,\"affiliation\":\"Laboratoire | 13 | astname\":\"Casa-Monroy\",\"orcid\":null,\"affiliation\":\"Laboratoire | ||
| 14 | Des Grands Lacs pour les P\u00eaches et les Sciences Aquatiques Great | 14 | Des Grands Lacs pour les P\u00eaches et les Sciences Aquatiques Great | ||
| 15 | Lakes Laboratory for Fisheries and Aquatic Sciences P\u00eaches et | 15 | Lakes Laboratory for Fisheries and Aquatic Sciences P\u00eaches et | ||
| 16 | Oc\u00e9ans Canada/Fisheries and Oceans Canada Canada Centre for | 16 | Oc\u00e9ans Canada/Fisheries and Oceans Canada Canada Centre for | ||
| 17 | Inland | 17 | Inland | ||
| 18 | ters\",\"iscorrespondingauthor\":null,\"contactemailaddress\":null}]", | 18 | ters\",\"iscorrespondingauthor\":null,\"contactemailaddress\":null}]", | ||
| 19 | "dataset_persistent_id": "DOI:10.25850/nioz/7b.b.lg", | 19 | "dataset_persistent_id": "DOI:10.25850/nioz/7b.b.lg", | ||
| 20 | "deposit_date": "2023-11-22", | 20 | "deposit_date": "2023-11-22", | ||
| 21 | "depositor": "Louis Peperzak", | 21 | "depositor": "Louis Peperzak", | ||
| 22 | "distribution_date": "2023-11-22", | 22 | "distribution_date": "2023-11-22", | ||
| 23 | "distributor": "Research Data Management(NIOZ Royal Netherlands | 23 | "distributor": "Research Data Management(NIOZ Royal Netherlands | ||
| 24 | Institute for Sea Research)", | 24 | Institute for Sea Research)", | ||
| 25 | "doi_date_published": "2024-02-22", | 25 | "doi_date_published": "2024-02-22", | ||
| 26 | "groups": [], | 26 | "groups": [], | ||
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| 30 | "license_title": "CC0 1.0", | 30 | "license_title": "CC0 1.0", | ||
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| 32 | "maintainer": null, | 32 | "maintainer": null, | ||
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| 34 | "metadata_created": "2024-10-22T17:51:22.371519", | 34 | "metadata_created": "2024-10-22T17:51:22.371519", | ||
| n | 35 | "metadata_modified": "2024-10-22T21:01:10.249387", | n | 35 | "metadata_modified": "2024-10-22T21:01:10.604728", |
| 36 | "name": "7bblg", | 36 | "name": "7bblg", | ||
| 37 | "notes": "A recent model demonstrated that the adenosine | 37 | "notes": "A recent model demonstrated that the adenosine | ||
| 38 | triphosphate (ATP) content of spherical aquatic organisms with a 10 to | 38 | triphosphate (ATP) content of spherical aquatic organisms with a 10 to | ||
| 39 | 50 \u00b5m diameter is between 0.16 to 19.9 pg cell-1. The model was | 39 | 50 \u00b5m diameter is between 0.16 to 19.9 pg cell-1. The model was | ||
| 40 | validated by comparing microscopy-based counts with ATP concentrations | 40 | validated by comparing microscopy-based counts with ATP concentrations | ||
| n | 41 | from a commercial ATP kit. \n\nOn average, freshwater organisms | n | 41 | from a commercial ATP kit. See: |
| 42 | contain 0.33 pg ATP cell-1, have a spherical equivalent diameter (sed) | 42 | https://doi.org/10.1016/j.marpolbul.2024.116066.\n\nOn average, | ||
| 43 | of 13 \u00b5m, while marine organisms have 0.89 pg ATP cell-1 and a | 43 | freshwater organisms contain 0.33 pg ATP cell-1, have a spherical | ||
| 44 | sed of 18 \u00b5m. The ATP content of both organisms falls in the 0.16 | 44 | equivalent diameter (sed) of 13 \u00b5m, while marine organisms have | ||
| 45 | to 19.9 pg cell-1 model range. In addition, their 13 to 18 \u00b5m | 45 | 0.89 pg ATP cell-1 and a sed of 18 \u00b5m. The ATP content of both | ||
| 46 | size is within the 10 to 50 \u00b5m ballast water size range and in | 46 | organisms falls in the 0.16 to 19.9 pg cell-1 model range. In | ||
| 47 | agreement with the average of 15 \u00b5m sed of a coastal plankton | 47 | addition, their 13 to 18 \u00b5m size is within the 10 to 50 \u00b5m | ||
| 48 | size-distribution model. \n\nThis study concludes that the ATP-model | 48 | ballast water size range and in agreement with the average of 15 | ||
| 49 | is reliable, emphasizing the need for caution when converting | 49 | \u00b5m sed of a coastal plankton size-distribution model. \n\nThis | ||
| 50 | three-dimensional biomass proxies into linear cell concentrations. | 50 | study concludes that the ATP-model is reliable, emphasizing the need | ||
| 51 | \n\nThe data used in the validation are accessible here.", | 51 | for caution when converting three-dimensional biomass proxies into | ||
| 52 | linear cell concentrations. \n\nThe data used in the validation are | ||||
| 53 | accessible here.", | ||||
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| 55 | "approval_status": "approved", | 57 | "approval_status": "approved", | ||
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| 138 | } | 140 | } | ||
| 139 | ], | 141 | ], | ||
| 140 | "state": "active", | 142 | "state": "active", | ||
| 141 | "subject": "Earth and Environmental Sciences", | 143 | "subject": "Earth and Environmental Sciences", | ||
| 142 | "tags": [ | 144 | "tags": [ | ||
| 143 | { | 145 | { | ||
| 144 | "display_name": "Adenosine triphosphate ATP plankton organisms | 146 | "display_name": "Adenosine triphosphate ATP plankton organisms | ||
| 145 | ballast water model verification", | 147 | ballast water model verification", | ||
| 146 | "id": "290868a4-ebaf-4337-8b80-9a345639579d", | 148 | "id": "290868a4-ebaf-4337-8b80-9a345639579d", | ||
| 147 | "name": "Adenosine triphosphate ATP plankton organisms ballast | 149 | "name": "Adenosine triphosphate ATP plankton organisms ballast | ||
| 148 | water model verification", | 150 | water model verification", | ||
| 149 | "state": "active", | 151 | "state": "active", | ||
| 150 | "vocabulary_id": null | 152 | "vocabulary_id": null | ||
| 151 | } | 153 | } | ||
| 152 | ], | 154 | ], | ||
| 153 | "title": "2023 ATP model verification data file", | 155 | "title": "2023 ATP model verification data file", | ||
| 154 | "type": "dataset", | 156 | "type": "dataset", | ||
| 155 | "url": "https://dataportal.nioz.nl/doi/10.25850/nioz/7b.b.lg", | 157 | "url": "https://dataportal.nioz.nl/doi/10.25850/nioz/7b.b.lg", | ||
| t | 156 | "version": "1" | t | 158 | "version": "2" |
| 157 | } | 159 | } |